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Course: Health and medicine > Unit 13
Lesson 1: Bacteria and viruses- Overview of Archaea, Protista, and Bacteria
- Bacterial characteristics - Gram staining
- Antibiotics
- Antibiotics: An overview
- What is antibiotic resistance?
- Bacterial meningitis
- Virus structure and classification
- Viral replication: lytic vs lysogenic
- Retroviruses
- Subviral particles: viroids and prions
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Virus structure and classification
Explore the intriguing world of viruses, the tiny robot hackers of microbiology. Learn about their distinct characteristics, including their minuscule size, unique shapes, and the types of nucleic acids they contain. Discover how these obligate intracellular parasites infiltrate host cells and replicate, and how they're classified based on their host type.
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- Since viruses can't produce their own energy, they would be unable to self-propel, right? How do they insert their genetic information into the cell? Is it a spontaneous process?(5 votes)
- Viruses have a protein capsid that allows them to interact with specific receptor proteins on specific cells. This is a response to evolutionary pressure on the virus to find a suitable entry point. Viruses that are inhaled or ingested will have a capsid that will look for receptors in the nose, mouth or lung tissues. Once bound to the receptor proteins the virus will undergo a conformational change that will allow the genetic material to be released. Blood born viruses will have protein capsids that will infect certain types of blood cells. Viruses do not actually self propel they remain in the matrix and interact with only cells that have the right kind of receptors. Viruses can also have a lipid layer that surrounds them, allowing them to be undergo endocytosis and be engulfed into the cell. This is a spontaneous process on behalf of the virus.(18 votes)
- Are the envelopes around viruses anything like the membranes of cellular life?(2 votes)
- Yes! That is where they get their envelopes from in the first place!
But only animal viruses can have envelopes on them; Phages (bacterial viruses) and plant viruses are always "naked", since bacteria and plant cells have cell walls, and thus don't allow viruses to leave with envelops by budding out.(8 votes)
- SO viruses are classified based on size, shape of protein, type of nucleic acid, and hacking method?(3 votes)
- The Baltimore Classification separates first by genetic material (DNA or RNA), and then by format: double stranded, single stranded positive, or single stranded negative. Positive single strand means it can go directly to the ribosome for translation, whereas negative sense means it must have a positive sense made first which is then translated. After that major difference, they're separated into families based on symmetry of capsid (icosahedral or helical), enveloped or naked, and then what format the genome is in. For RNA viruses, they can be continuous or segmented. Example, flu viruses have 8 segments, HIV has 2 whole copies of its genome, and polio only has 1 continuous (non-segmented) genome. DNA viruses are classed by linear or circular genomes. Herpes is a double stranded linear genome, parvovirus (distemper in dogs) is a single stranded linear, and baculoviruses (arthropod lethal viruses) are double stranded circular.(4 votes)
- is the eukaryotic cell 1000x larger than viruses or bacteria?(3 votes)
- The eukaryotic cell is 1000x larger than bacteria.(0 votes)
- Proteins type included in capsid? More details about capsid protein?(2 votes)
- Specific proteins for the capsid vary based on the virus. Since the virus only has genetic information within it's nucleocapsid, it is only able to replicate SPECIFICALLY what is encoded in their genome given the fact that it is able to replicate inside a host cell using it's ribosome/energy/etc. to eventually make the capsid protein again. As she stated in the video, envelopes are typically left at the plasma membrane of the cell and are able to be obtained again for viral progeny by budding (or exiting) the host cell.(1 vote)
- what is the Baltimore classification? I understand the ones mentioned but my textbook keeps talking about David Baltimore and I don't understand it(1 vote)
- The Baltimore classification system just allows you to group viruses based on their genome and how they replicate(2 votes)
- Viruses do not consist of cells and also lack cell membranes, cytoplasm, ribosomes, and other cell organelles.
What would viruses be capable of doing if they did indeed have these structures in place? Would they then be considered living? Defend your answer, citing evidence from the paragraphs above(0 votes)- They wouldn't be viruses(4 votes)
- virion particles (virions) function for transmission, correct?(1 vote)
- Virions are not part of the virus, they are viruses itself. But, are [peculiar because theses are the infective form of viruses outside the host cells. Their outer protein covering(shell) is called caspid and posses either RNA or DNA(2 votes)
- From reading around the internet, it appears as though the term for the units that make up the capsid is "capsoMERE" not "capsoMER", the latter being presented in the video.
https://en.wikipedia.org/wiki/Capsomere(1 vote) - What is classification of virus?(1 vote)
Video transcript
Viruses are interesting because they are the robot hackers of microbiology, and in this video, we're gonna learn about what, exactly, makes them so good at being robot hackers. So let's think about the
things that define viruses. There's four things
we're going to look at. First, they're really, really small. So, size. The virus is about that big. Compared to that tiny virus, this would be the size
of a typical bacterium. It is 100 times larger than a virus. If you can just imagine this being, well, I clearly didn't
draw this large enough, but you can just imagine that there's 100 viruses across here, and this would be 100 times larger, and a typical eukaryotic cell,
like our own human cells, would pretty much not fit on this page. You can kind of imagine,
since it's 1000 times bigger, it would form a circle
that just goes straight off on either end of this quarter
circle that I've drawn, kind of forming a full circle, just going all the way around. So, we talked about size between viruses, bacteria, and our human cells, but, there's another aspect of size, which is, the size of viruses
compared to each other, and of course, some viruses
are larger than others, and that's one way to tell
different viruses apart. Some are super small, and
other ones are just small. I could have drawn bigger and smaller dots that represent viruses. Now, the next thing that you
can tell viruses apart with is their shape. Just think about these tiny,
little things being blown up. We're just gonna talk about why they look like they look, and what causes them to be
the shapes that they are. So, all viruses have this capsid. It's a protein code, and, they're all very unique shapes. You can think of them as
the legos of these viruses. Legos because they need
these little building blocks called the capsomers to build their shape. So I'm just building them
with these little blobs here that you can see on the screen, and, even though I haven't
drawn this really well, they're actually all the same size, and all the same shape
for that particular virus. So each of these little things
would be called a capsomer, and these capsomers form
these three really beautiful three-dimensional shapes, so this looks kind of 2D, but if you can imagine
kind of like a six-pointed, three-dimensional looking... This kind of six-sided diamond-like shape is called the icosahedral configuration, and there's also something that, if you first look at it, it looks kind of helical, but again, it's not formed like this. It's actually lots of little monomers that wrap around, kind of like a helix, and it looks actually
more like a cylinder, but, this, because it
wraps around like that, is called a helical shape, and one other possibility is the spherical shape, so this gray line that
I've drawn is an envelope, and it sometimes covers the capsid, and I say sometimes, because not all viruses have this envelope. It kind of gives it an advantage that we're gonna talk about later, so, any one of these
options can be inside, and, if you can imagine,
since it's an envelope, wrapping that protein code in a circle, this is the spherical shape, like a ball. So that's two of four things
to distinguish viruses with. Now here's the third one. This is also pretty straight-forward. It's just the genetic
information contained in viruses, the nucleic acid. So, there are actually four options. So viruses are really cool
because they can contain one type of nucleic acid. In fact, they only contain that type. So you've seen double-stranded DNA before, which is in most of your human cells. You've also seen single-stranded RNA, kind of like your messenger RNA, but you probably haven't seen some single-stranded DNA, or double-stranded RNA, and this is pretty unique to viruses. They're special, because they contain one of these types of nucleic acids. This is one of the ways
to distinguish them. So, a virus can be a single-stranded DNA virus, or a single-stranded RNA virus. They can not be both, and that's why nucleic acids
are that third category. It distinguishes viruses from each other, and this genetic information
can't just float around. It actually is kind of packaged. It's stored inside of the protein coat, and because this is called a capsid, and this is nucleic acid, when they're put together
to form that virus, and I'm just going to simplify
that icosahedral drawing into this kind of hexagon shape, and let's just pretend it's a single-stranded RNA virus, then this is called a nucleocapsid, and again, this might,
or might not be envelope. This one here that I've drawn is non-envelope, because it doesn't have a gray dotted line surrounding it. So now that we've gone
over these first three basic ways to tell viruses apart, size, shape, nucleic acid, we can now go back and
figure out why I said that viruses are robot hackers. And that actually will give us the fourth way to tell
viruses apart, right? So, I'm just gonna write here, robot hacker, because if you look back at
what we just talked about, viruses are really small, and they're made up of proteins, and one type of nucleic acid, they don't have organelles, and that means, they can't make ATP, or
energy for themselves, and they can't really replicate, then, because they don't have organelles, so that's one problem, because
all living things metabolize, so that's the robot part, and they sneak in to larger
cells that have organelles, that they can take over to make copies of themselves. So the official term for
robot hackers in biology is obligate, it absolutely needs to be inside a cell, obligate intracellular parasite. Hacks onto other things to survive, and because it needs to do that, you can probably guess now, that the fourth way to tell these apart, is by the type of host. So one question people always ask is that, "Well, is a bacteriophage
a virus, or what is it?" So, it's actually the name for viruses that infect bacteria, and the ones that infect eukaryotic cells, for example, us humans, they're all different enough in size, shape, nucleic acid, and disease that they cause, that they have some pretty famous names, like pox virus, or herpes virus, or parvovirus, and there's so many more, so, these robot hackers hack in using some special methods that I haven't mentioned yet, and they actually both have to do with shape adaptations, which makes sense, because,
that's the outside part of the virus that comes
in contact with the cells, because if they weren't good
at getting into the cells, they would never make
copies of themselves, so, as robot hackers, they must do something special to get in, and bacteriophages have this complex shape. They are not just icosahedral or helical. They might have that initial, that nucleocapsid at the top, with the head portion that contains the nucleic acid, but it also has a sheath acting like a needle that the nucleic acid can be shot down, and a tail that attaches
to the host bacteria, so, even though I've drawn it this way, you can actually imagine it attaching to the bacteria like this, because the tail will bind it, and it will act,
literally, like a needle to inject the bacteria. And I'm gonna use this
eukaryotic cell as an example for this other shape quirk
that lets viruses get in, because the eukaryotic
cell that I've drawn here is so large, it's just got
this giant line of membrane for me to draw on, and basically, if it can't inject its genetic material
like the complex virus, then it sneaks in, and I keep saying that, but the reason I'm saying "it sneaks," is because every cell has
receptors on its surface, and these usually are regular receptors that cells need to communicate
information to and from, but viruses take advantage of that. These receptors can't really
tell the difference between normal signals, or normal cells, and a viral cell, so, this icosahedral or helical thing will come along, and signal to these receptors, and it'll trick the receptors
into forming this pit, and eventually, it will
bud off into an endosome, and it just kind of sits happily inside, having sneaked in, and you might recognize as endocytosis, endocytosis entering the cell, so they made up this big, fancy name for a very simple, it entered
the cell with receptors, receptor mediated endocytosis, receptors, endosome, and, the sneaky reason as to why some cells have these gray envelopes
that I mentioned before to give them that spherical shape, that just gives them an extra way in, so they can also enter with the receptor mediated endocytosis, so I'm just gonna draw a gray dotted line around this one area, so you can kind of imagine that, yes, if it had an envelope,
it could also enter this way, but it has an extra option, and that's because it already has this bubble, so it signals to the membrane, "Hey, I'm just going to fuse with you. "I'm gonna combine with you, "and let myself in," and they kind of got
fancy with this name, too, and because it directly
fuses with the membrane to let itself in, it's
called direct fusion. And now you have a general idea of how to tell viruses apart, and how they really are the robot hackers of the microbiology world.